原著論文

2024年

  • T. Davie, X. Serrat, L. Imhof, J. Snider, I. Štagljar, J. Keiser, H. Hirano, N. Watanabe, H. Osada & *A.G. Fraser, “Identification of a novel family of species-selective complex i inhibitors as potential anthelmintics”, Nature Commun., (accepted). B01
  • S.I. Reja, M. Minoshima, Y. Hori & *K. Kikuchi, “Recent Advancements of Fluorescent Biosensors Using Semisynthetic Probes”, Biosens. Bioelectron., 247, 115862 (2024). DOI: 10.1016/j.bios.2023.115862 A01
  • Y. Muraoka & *M. Ueda, “Quick Guide Nyctinasty”, Curr. Biol., in press (2024).A01
  • K. Torii, S. Benson, *Y. Hori, *M. Vendrell & *K. Kikuchi, “No-wash Fluorogenic Labeling of Proteins for Reversible Photoswitching in Live Cells”, Chem. Sci., 15, 1393-1401 (2024). DOI: 10.1039/D3SC04953A A01
  • *K.L. Granberg, S. Sakamaki, N. Larsson, F. Bergström, R. Fuchigami, Y. Niwa, E. Ryberg, A. Backmark, H. Kato, S. Miyazaki, K. Iguchi, T. Sakamoto, M. Persson, A. Idei, L.P. Garcia, I.C. Villar, H. Gradén, G. Bergonzini, T. Arvidsson, T. Fujita, M. Althage, J. Ulander, J. Kimura, H. Yoneda, O. Fjellström, H. Mochida & M. La, “Discovery of Clinical Candidate AZD5462, a Selective Oral Allosteric RXFP1 Agonist for Treatment of Heart Failure”, J. Med. Chem., 67, 4419−444 (2024). DOI: 10.1021/acs.jmedchem.3c02184 A01
  • M. Uehara, T. Inoue, S. Hase, E. Sasaki, A. Toyoda & *Y. Sakakibara, “Decoding host-microbiome interactions through co-expression network analysis within the non-human primate intestine”, mSystem, e0140523 (2024). DOI: 10.1128/msystems.01405-23 B01
  • T. Kaji, K. Matsumoto, T. Okumura, M. Nakayama, S. Hoshino, Y. Takaoka, J. Wang & *M. Ueda, “Two distinct modes of action of molecular glues in the plant hormone co-receptor COI1-JAZ system”, iScience, 27, 108625 (2024). DOI: 10.1016/j.isci.2023.108625 A01
  • Q.V. Vu, K. Baba, S. Sasaki, K. Kawaguchi, H. Hirano, H. Osada & *T. Kataoka, “Alantolactone derivatives inhibit the tumor necrosis factor α-induced nuclear factor κb pathway by a different mechanism from alantolactone”, Eur. J. Pharmacol., 969, 176458 (2024). DOI: 10.1016/j.ejphar.2024.176458 B01
  • *K. Watanabe, Q. Mao, Z. Zhang, M. Hata, M. Kodera, H. Kitagishi, T. Niwa & *T. Hosoya, “Clickable bisreactive small gold nanoclusters for preparing multifunctionalized nanomaterials: application to photouncaging of an anticancer molecule”, Chem. Sci., 15, 1402 (2024). DOI: 10.1039/D3SC04365G C01
  • S. Kimura, Y. Watanabe, Y. Kikuchi, S. Shibasaki, H. Tsutsumi, Y. Inahashi, R. Hokari, A. Ishiyama & *M. Iwatsuki, “Akedanones A-C, in vitro and in vivo antiplasmodial 2,3-dihydronaphthoquinones produced by Streptomyces sp. K20-0187”, J. Nat. Prod., in press (2024). DOI: 10.1021/acs.jnatprod.3c01285 A01
  • K. Sakai, Y. Futamura, T. Nogawa, Y. Zhao, H. Koshino, H. Osada & *S. Takahashi, “Production of kinanthraquinone D with antimalarial activity by heterologous gene expression and biotransformation in Streptomyces lividans TK23”, J. Nat. Prod., Epub ahead of print, DOI: 10.1021/acs.jnatprod.3c01076 B01
  • A. Tučs, T. Ito, Y. Kurumida, S. Kawada, H. Nakazawa, Y. Saito, *M. Umetsu & *K. Tsuda, “Extensive antibody search with whole spectrum black-box optimization”, Sci. Rep., 14, 552 (2024). DOI: 10.1038/s41598-023-51095-z B01
  • *C. Tsukano, A. Uchino & *K. Irie, “Synthesis and application of symmetric amino acid derivatives”, Org. Biomol. Chem., 22, 411-428 (2024). DOI: 10.1039/D3OB01379K C01
  • R. Hashimoto, M. Minoshima & *K. Kikuchi, “Rational Design of Hydroxylated Thiazole Orange Photocages for Green Light-Triggered DNA Recombination”, ChemBioChem, 25, e202300799 (2024). DOI: 10.1002/cbic.202300799 A01
  • #C. Pan, #H. Ikeda, M. Minote, T. Tokuda, T. Kuranaga, T. Taniguchi, N. Shinzato, H. Onaka, *H. Kakeya & A. Amoxetamide, “A new anoikis inducer, produced by combined-culture of Amycolatopsis sp. and Tsukamurella pulmonis”, J. Antibiot., 77, 66-70 (2024). (#equal contribution) DOI: 10.1038/s41429-023-00668-1 A01
  • D. Mao, P. Yu, N. Shinzato, L. Zhang, W. Zheng, S. Lu & *H. Kakeya, “Precezomysin, a novel antibiotic biosynthetic precursor of cezomycin, from actinomycete Kitasatospora putterlickiae 10-13”, J. Antibiot., 88, 189-192 (2024). DOI: 10.1038/s41429-023-00695-y A01
  • K. Kaneko, M. Mieda, Y. Jiang, N. Takahashi & *H. Kakeya, “Tumescenamide C, a cyclic lipodepsipeptide from Streptomyces sp. KUSC_F05, exerts antimicrobial activity against the scab-forming actinomycete Streptomyces scabiei” J. Antibiot., in press (2024). DOI: 10.1038/s41429-024-00716-4 A01
  • S. Suzuki, S. Saito, Y. Narushima, S. Kodani, N. Kagaya, H. Suenaga, K. Shin-ya & *M.A. Arai, “Notch activator cyclopiazonic acid induces apoptosis in HL-60 cells through calcineurin activation”, J. Antibiot., 77, 30-38 (2024). DOI: 10.1038/s41429-023-00673-4 A01
  • H. Azami, Y. Watanabe, K. Sakai, H. Nakahara, H. Kojima, T. Tokiwa, K. Nonaka, Y. Noguchi, Y. Nagano, T. Hirose, T. Sunazuka, H. Matsui, N. Arima, K. Abe, H. Hanaki & *M. Iwatsuki, “Antifungal profile against Candida auris clinical isolates of tyroscherin and its new analog produced by the deep-sea-derived fungal strain Scedosporium apiospermum FKJ-0499”, J. Antibiot., 77, 156-162 (2024). DOI: 10.1038/s41429-023-00696-x A01
  • S.I. Kimura, Y. Watanabe, Y. Mikasa, R. Miyano, T. Tokiwa, K. Nonaka, T. Nakashima, Y. Noguchi, T. Hirose, T. Sunazuka, R. Hokari, A. Ishiyama & *M. Iwatsuki, “Virgaricins C and D, new pramanicin analogs produced by Apiospora sp. FKI-8058”, J. Antibiot., 77, 206-213 (2024). DOI: 10.1038/s41429-023-00699-8 A01
  • S. Kimura, Y. Watanabe, S. Shibasaki, N. Shinzato, Y. Inahashi, T. Sunazuka, R. Hokari, A. Ishiyama & *M. Iwatsuki, “New antimalarial iromycin analogs produced by Streptomyces sp. RBL-0292”, J. Antibiot., in press (2024). DOI: 10.1038/s41429-024-00707-5 A01
  • Y. Yokota, K. Takaki, K. Baba, S. Sasaki, H. Hirano, H. Osada & *T. Kataoka, “Amiodarone inhibits the toll-like receptor 3-mediated nuclear factor κb signaling pathway by blocking organelle acidification”, Biochem. Biophys. Res. Commun., 708, 149801 (2024). DOI: 10.1016/j.bbrc.2024.149801 B01
  • S. Wangamnuayporn, M. Kinoshita, T. Kawai & *N. Matsumori, “Gold nanoparticle-powered screening of membrane protein-specific lipids from complex lipid mixtures”, Anal. Biochem., 687, 115447 (2024). DOI: 10.1016/j.ab.2023.115447 A01
  • *N. Matsumori, M. Hieda, M. Morito, Y. Wakamiya & T. Oishi, “Truncated derivatives of amphidinol 3 reveal the functional role of polyol chain in sterol-recognition and pore formation”, Bioorg. Med. Chem. Lett., 98, 129594 (2024). DOI: 10.1016/j.bmcl.2023.129594 A01
  • *F. Ishikawa, S. Konno, H. Kakeya & *G. Tababe, “Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells”, Beilstein J. Org. Chem., 20, 445-451 (2024). DOI: 10.3762/bjoc.20.39 A01
  • *S. Saito & *M.A. Arai, “Methodology for awakening the potential secondary metabolic capacity in actinomycetes”, Beilstein J. Org. Chem., 20, 753-766 (2024). (Review). DOI: 10.3762/bjoc.20.69 A01
  • *S. Saito, T. Banno & *M.A. Arai, “3-Hydroxy-3-(2-oxopropyl)indolin-2-one, a product of a human-derived Enterocloster strain, is an inhibitor of nitric oxide production”, Biosci. Biotechnol. Biochem., 88, 316-321 (2024). DOI: 10.1093/bbb/zbad172 A01
  • *Y. Ando, D. Ogawa, F. Wakita, K. Suzuki & *K. Ohmori, “Photochemical Reaction of 1,2-Naphthoquinone toward Enantioselective Synthesis of g-Rubromycin: Viability Dependence on Chromophore”, Synlett, 35, 441-444 (2024). DOI: 10.1055/a-2113-0212 C01
  • Y. Konishi, Y. Otera, M. Minoshima & *K. Kikuchi, “Activatable 19F MRI Probe for Detection of α-amylase Activity”, Chem. Lett., 53, upae003 (2024). DOI: 10.1093/chemle/upae003 A01

2023

  • Y. Konishi, M. Minoshima, K. Fujihara, T. Uchihashi & *K. Kikuchi, “Elastic Polymer-coated Nanoparticles with Fast Clearance for 19FMR Imaging”, Angew. Chem. Int. Ed., 62, e202308565 (2023). DOI: 10.1002/anie. 202308565 A01
  • M. Minoshima, T. Umeno, K. Kadooka, M. Roux, N. Yamada & *K. Kikuchi, “Development of a Versatile Protein Labeling Tool for Live-Cell Imaging Using Fluorescent β-Lactamase Inhibitors”, Angew. Chem. Int. Ed., 62, e202301704 (2023). DOI: 10.1002/anie.202301704 A01
  • *Z. Zhang, T. Niwa, K. Watanabe & *T. Hosoya, “11C-Cyanation of Aryl Fluorides via Nickel and Lithium Chloride-Mediated C–F Bond Activation”, Angew. Chem. Int. Ed., 62, e202302956 (2023). DOI: 10.1002/anie.202302956 C01
  • S. Takase, T. Hiroyama, F. Shirai, Y. Maemoto, A. Nakata, M. Arata, S. Matsuoka, T. Sonoda, H. Niwa, S. Sato, T. Umehara, M. Shirouzu, Y. Nishigaya, T. Sumiya, N. Hashimoto, R. Namie, M. Usui, T. Ohishi, S. Ohba, M. Kawada, Y. Hayashi, H. Harada, T. Yamaguchi, Y. Shinkai, Y. Nakamura, *M. Yoshida & *A. Ito, “A specific G9a inhibitor unveils BGLT3 lncRNA as a universal mediator of chemically induced fetal globin gene expression”, Nat. Commun., 14, 23 (2023). DOI: 10.1038/s41467-022-35404-0 A01
  • A. Fadini, C.D.M. Hutchison, D. Morozov, J. Chang, K. Maghlaoui, S. Perrett, F. Luo, J.C.X. Kho, M.G. Romei, R.M.L. Morgan, C.M. Orr, V. Cordon-Preciado, T. Fujiwara, N. Nuemket, T. Tosha, R. Tanaka, S. Owada, K. Tono, S. Iwata, S.G. Boxer, G. Groenhof, *E. Nango & *J.J. van Thor, “Serial Femtosecond Crystallography Reveals that Photoactivation in a Fluorescent Protein Proceeds via the Hula Twist Mechanism”, J. Am. Chem. Soc., 145, 15796-15808 (2023). DOI: 10.1021/jacs.3c02313 A01
  • H. Kuroiwa, S. Suzuki, K. Irie & *C. Tsukano, “Total Synthesis and Structure Revision of (+)-Lancilactone C”, J. Am. Chem. Soc., 145, 14587-14591 (2023). DOI: 10.1021/jacs.3c04124 C01
  • K. Takayama, S. Matsuoka, S. Adachi, T. Honma, M. Yoshida, T. Doi, K. Shin-Ya, M. Yoshida, H. Osada & *S. Inoue, “Identification of small-molecule inhibitors against the interaction of RNA-binding protein PSF and its target RNA for cancer treatment”, PNAS Nexus, 2, 1-10 (2023). DOI: 10.1093/pnasnexus/pgad203 A01B01
  • M. Kato, K. Maeda, R. Nakahara, H. Hirose, A. Kondo, S. Aki, M. Sugaya, S. Hibino, M. Nishida, M. Hasegawa, H. Morita, R. Ando, R. Tsuchida, M. Yoshida, T. Kodama, H. Yanai, T. Shimamura & *T. Osawa, “Acidic extracellular pH drives accumulation of N1-acetylspermidine and recruitment of protumor neutrophils”, PNAS Nexus, 2, pgad306 (2023). DOI: 10.1093/pnasnexus/pgad306 A01
  • Y. Muraoka, G. Yang, S. Munemasa, Y. Takeuchi, Y. Ishimaru, Y. Murata, N. Uozumi & *M. Ueda, “An outward-rectifying plant K+ channel SPORK2 exhibits temperature-sensitive ion transport activity”, Curr. Biol., 33, 5488-5494 (2023). DOI: 10.1016/j.cub.2023.10.057 A01
  • K. Noritsugu, T. Suzuki, K. Dodo, K. Ohgane, Y. Ichikawa, K. Koike, S. Morita, T. Umehara, K. Ogawa, M. Sodeoka, N. Dohmae, *M. Yoshida & *A. Ito, “Lysine long-chain fatty acylation regulates the TEAD transcription factor”, Cell Rep., 42, 112388 (2023). DOI: 10.1016/j.celrep.2023.112388 A01
  • K.R. Iyer, S.C. Li, N.M. Revie, J.W. Lou, D. Duncan, S. Fallah, H. Sanchez, I. Skulska, M.M. Ušaj, H. Safizadeh, B. Larsen, C. Wong, A. Aman, T. Kiyota, M. Yoshimura, H. Kimura, H. Hirano, M. Yoshida, H. Osada, A.C. Gingras, D. R Andes, R.S. Shapiro, N. Robbins, M.T. Mazhab-Jafari, L. Whitesell, *Y. Yashiroda, *C. Boone & *L.E. Cowen, “Identification of triazenyl indoles as inhibitors of fungal fatty acid biosynthesis with broad-spectrum activity”, Cell Chem. Biol., 30, 795-810.e8 (2023). DOI: 10.1016/j.chembiol.2023.06.005 A01B01
  • M. Nishiura, Y. Hori, M. Umeno & *K. Kikuchi, “Visualization of Multiple Localizations of GLUT4 by Fluorescent Probes of PYP-tag with Designed Unnatural Warhead”, Chem. Sci., 14, 5925-5935 (2023). DOI: 10.1039/D3SC00724c A01
  • *Y. Nishiga, S. Takase, T. Sumiya, K. Kikuzato, T. Sato, H. Niwa, S. Sato, A. Nakata, T. Sonoda, N. Hashimoto, R. Namie, T. Honma, T. Umehara, M. Shirouzu, H. Koyama, M. Yoshida, A. Ito & *F. Shirai, “Discovery of Novel Substrate-Competitive Lysine Methyltransferase G9a Inhibitors as Anticancer Agents”, J. Med. Chem., 66, 4059-4085(2023). DOI: 10.1021/acs.jmedchem.2c02059 A01
  • T. Matsuoka, A. Hattori, S. Oishi, M. Araki, T. Fujii, N. Arichi, Y. Okuno, H. Kakeya, S. Yamazaki, *H. Ohno & *S, Inuki, “Establishment of the MR1-presentation reporter screening system and identification of phenylpropanoid derivatives as MR1 ligands“, J. Med. Chem., 66, 12520-12535 (2023). DOI: 10.1021/acs.jmedchem.3c01122 A01
  • K. Torii, Y. Hori & *K. Kikuchi, “Persistent Fluorescence Switching of a Probe Using a Photochromic Quencher with High Photostability Assisted by Protein-Surface Modification”, Anal. Chem., 95, 8834-8841 (2023). DOI: 10.1021/acs.analchem.3c00163 A01
  • J. Wang, O.B. Fasina, M. Manzoor, Y. Wang, Q. Liu, J. Mo, H. Ohno, H. Osada, L. Xiang & *J. Qi, “A new gentiopicroside derivative improves cognitive deficits of AD mice via activation of Wnt signaling pathway and regulation of gut microbiota homeostasis“, Phytomedicine, 113, 154730 (2023). DOI: 10.1016/j.phymed.2023.154730 B01
  • T. Ochiai, T. Inukai, M. Akiyama, K. Furui, M. Ohue, N. Matsumori, S. Inuki, M. Uesugi, T. Sunazuka, K. Kikuchi, H. Kakeya & *Y. Sakakibara, “Variational autoencoder-based chemical latent space for large molecular structures with 3D complexity”, Commun. Chem., 6, 249 (2023). DOI: 10.1038/s42004-023-01054-6 A01B01
  • M. Dubol, J. Immenschuh, My Jonasson, K. Takahashi, T. Niwa, T. Hosoya, S. Roslin, J. Wikström, G. Antoni, Y. Watanabe, M. Lubberink, A. Biegon, I. Sundström-Promaa & *E. Comasco, “Acute nicotine exposure blocks aromatase in the limbic brain of healthy women: A [11C]cetrozole PET study”, Compr. Psychiatry, 123, 152381 (2023). DOI: 10.1016/j.comppsych.2023.152381 C01
  • *Y. Furutani, Y. Hirano, M. Toguchi, S. Higuchi, X-Y. Qin, K. Yanaka, Y. Sato-Shiozaki, N. Takahashi, M. Sakai, P. Kongpracha, T. Suzuki, N. Dohmae, M. Kukimoto-Niino, M. Shirouzu, S. Nagamori, H. Suzuki, K. Kobayashi, T. Masaki, H. Koyama, K. Sekiba, M. Otsuka, K. Koike, M. Kohara, S. Kojima, H. Kakeya & T. Matsuura, “A small chemical compound iCDM-34 identified by in silico screening suppresses HBV DNA through activation of arylhydrocarbon receptor”, Cell Death Discov., 9, 216 (2023). DOI: 10.1038/s41420-023-01755-w A01
  • *H. Kobayashi, S. Takase, H. Nishimura, K. Matsumoto, H. Harada & *M. Yoshida, “RNAi screening reveals a synthetic chemical-genetic interaction between ATP synthase and PFK1 in cancer cells”, Cancer Sci., 114, 1663-1671 (2023). DOI: 10.1111/cas.15713 A01
  • S. Shimizu, J. Kondo, K. Onuma, R. Coppo, K. Ota, M. Kamada, Y. Harada, Y. Tanaka, M. Adachi Nakazawa, Y. Tamada, Y. Okuno, K. Kawada, K. Obama, R. J Coffey, Y. Fujiwara & *M. Inoue, “Inhibition of the bone morphogenetic protein pathway suppresses tumor growth through downregulation of epidermal growth factor receptor in MEK/ERK-dependent colorectal cancer”, Cancer Sci., 114, 3636-3648 (2023). DOI: 10.1111/cas.15882 B01
  • *G. Yang, H. Xie, C. Wang, C. Zhang, L. Yu, L. Zhang, R. Xu, Z. Song, R. Liu & M. Ueda, “Design, synthesis, and discovery of Eudistomin Y derivatives as lysosome-targeted antiproliferation agents“, Eur. J. Med. Chem., 250, 115193 (2023). DOI: 10.1016/j.ejmech.2023.115193 A01
  • *F.H.P. Tan, A.C.J. Ting, N. Najimudin, N. Watanabe, S. Shamsuddin, A. Zainuddin, H. Osada & *G. Azzam, “3-[[(3s)-1,2,3,4-tetrahydroisoquinoline-3-carbonyl]amino]propanoic acid (thicapa) is protective against aβ42-induced toxicity in vitro and in an alzheimer's disease drosophila“, J. Gerontol. A Biol. Sci. Med. Sci., 78, 1944-1952 (2023). DOI: 10.1093/gerona/glad169 B01
  • K. Hayashi, N. Kato, K. Bashir, H. Nomoto, M. Nakayama, A. Chini, S. Takahashi, H. Saito, R. Watanabe, Y. Takaoka, M. Tanaka, A. Nagano, M. Seki, R. Solano & *M. Ueda, “Subtype-selective agonists of plant hormone co-receptor COI1-JAZs identified from the stereoisomers of coronatine“, Commun. Biol., 6, 320 (2023). DOI: 10.1038/s42003-023-04709-1 A01
  • T. Ito, T.D. Nguyen, Y. Saito, Y. Kurumida, H. Nakazawa, S. Kawada, H. Nishi, K. Tsuda, *T. Kameda & *M. Umetsu, “Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning“, mAbs, 15, 2168470 (2023). DOI: 10.1080/19420862.2023.2168470 B01
  • A. Kumar, M. Matsuoka, A. Matsuyama, *M. Yoshida & *K.Y.J. Zhang, “Identification of Fungal and Bacterial Denitrification Inhibitors Targeting Copper Nitrite Reductase”, J. Agric. Food Chem., 71, 5172-5184 (2023). DOI: 10.1021/acs.jafc.3c00896 A01
  • R. Saito, T. Muto, H. Urano, T. Kitajima, N. Kato, E. Kwon & *M. Ueda, “(3R, 7S)-12-Hydroxy- jasmonoyl-L-isoleucine is the genuine bioactive form of a jasmonate metabolite in Arabidopsis thaliana”, Plant J., 115, 709-723 (2023). DOI: 10.1111/tpj.16256　Selected as a Faculty Opinions article. A01
  • N. Saeki, C. Yamamoto, Y. Eguchi, T. Sekito, S. Shigenobu, M. Yoshimura, Y. Yashiroda, C. Boone & *H. Moriya, “Overexpression profiling reveals cellular requirements in the context of genetic backgrounds and environments”, PLoS Genet., 19, e1010732 (2023). DOI: 10.1371/journal.pgen.1010732 A01
  • S. Taniguchi, Y. Ono, Y. Doi, S. Taniguchi, Y. Matsuura, A. Iwasaki, N. Hirata, R. Fukuda, K. Inoue, M. Yamaguchi, A. Tashiro, D. Egami, S. Aoki, Y. Kondoh, K. Honda, H. Osada, H. Kumeta, T. Saio & *T. Okiyoneda, “Identification of α-Tocopherol succinate as an RFFL-substrate interaction inhibitor inducing peripheral CFTR stabilization and apoptosis“, Biochem. Pharmacol., 215, 115730 (2023). DOI: 10.1016/j.bcp.2023.115730 B01
  • M. Iwamoto, M. Morito, S. Oiki, Y. Nishitani, D. Yamamoto & *N. Matsumori, “Cardiolipin binding enhances KcsA channel gating via both its specific and dianion-monoanion interchangeable site”, iScience, 26, 108471 (2023). DOI: 10.1016/j.isci.2023.108471 A01
  • R. Coppo, J. Kondo, K. Iida, M. Okada, K. Onuma, Y. Tanaka, M. Kamada, M. Ohue, K. Kawada, K. Obama & *M. Inoue, “Distinct but interchangeable subpopulations of colorectal cancer cells with different growth fates and drug sensitivity”, iScience, 26, 105962 (2023). DOI: 10.1016/j.isci.2023.105962 B01
  • T. Kosugi & *M. Ohue, “Design of cyclic peptides targeting protein-protein interactions using AlphaFold”, Int. J. Mol. Sci., 24, 13257 (2023). DOI: 10.3390/ijms241713257 B01
  • Z. Liu, K. Ishikawa, E. Sanada, K. Semba, J. Li, X. Li, *H. Osada & *N. Watanabe, “Identification of antimycin A as a c-Myc degradation accelerator via high-throughput screening“, J. Biol. Chem., 299, 105083 (2023). DOI: 10.1016/j.jbc.2023.105083 B01
  • Z. Liu, Y. Yashiroda, P. Sun, H. Ma, Y. Wang, L. Li, F. Yan & *Y. Sun, “Argenteolides A and B, Glycosylated Polyketide-Peptide Hybrid Macrolides from an Actinomycete Streptomyces argenteolus”, Org. Lett., 25, 571-575 (2023). DOI: 10.1021/acs.orglett.2c03290 A01
  • J. Zhang, K. Suzuki & *K. Ohmori, “Total Synthesis of Sparsomycin and Sparoxomysins A1 and A2 via Sulfenate-Anion-Mediated Iterative C-S Bond Formation”, Org. Lett., 25, 9036-9040 (2023). DOI: 10.1021/acs.orglett.3c03791 C01
  • S. Okuda, *C. Tsukano & K. Irie, “Synthesis of Stereoisomeric Simplified Analogs of Alotaketals toward the Elucidation of the Structural Requirements of Protein Kinase C Isozyme-Selective Binding”, Org. Lett., 25, 805-809 (2023). DOI: 10.1021/acs.orglett.2c04328 C01
  • J. Taguchi, T. Okuyama, S. Tomita, T. Niwa & *T. Hosoya, “Synthesis of Multisubstituted Aromatics via 3-Triazenylarynes”, Org. Lett., 25, 7030-7034 (2023). DOI: 10.1021/acs.orglett.3c02615 C01
  • *T. Niwa, T. Takimoto, Y. Sakata & *T. Hosoya, “Palladium-Catalyzed ipso-Borylation of Aryl Halides Promoted by Lewis Acid-Mediated Electrophilic Activation of Aryl(halo)palladium(II) Complex”, Org. Lett., 25, 8173-8177 (2023). DOI: 10.1021/acs.orglett.3c03531 C01
  • Y. Ogawa, Y. Saito, H. Yamaguchi, *Y. Katsuyama & Y. Ohnishi, ” Engineering the substrate specificity of toluene degrading enzyme XylM using biosensor XylS and machine learning”, ACS Synthetic Biology, 12, 572-582 (2023). DOI: 10.1021/acssynbio.2c00577 B01
  • M. Ozaki, M. Shimotsuma, T. Kuranaga, *H. Kakeya & *T. Hirose,” Separation of amyloid β fragment peptides with racemised and isomerised aspartic acid residues using an original chiral resolution labeling reagent”, Analyst, 148, 1209-1213 (2023). DOI: 10.1039/d2an01885c A01
  • Y. Pan, T. Suzuki, K. Sakai, Y. Hirano, H. Ikeda, A. Hattori, N. Dohmae, K. Nishio, *H. Kakeya & A. Bisabosqual, “A novel asparagine synthetase inhibitor suppressing the proliferation and migration of human non-small cell lung cancer A549 cells” Eur. J. Pharmacol., 960, 176156 (2023). DOI: 10.1016/j.ejphar.2023.17615 A01
  • T. Niwa, T. Tahara, C.E. Chase, F.G. Fang, T. Nakaoka, S. Irie, E. Hayashinaka, Y. Wada, H. Mukai, K. Masutomi, Y. Watanabe, Y. Cui & *T. Hosoya, “Synthesis of 11C-Radiolabeled Eribulin as a Companion Diagnostics PET Tracer for Brain Glioblastoma”, Bull. Chem. Soc. Jpn., 96, 283-290 (2023). DOI: 10.1246/bcsj.20220335 C01
  • Y. Kumagai, Y. Saito & *Y.S. Kida, ”A multiomics atlas of brown adipose tissue development over time,” Endocrinology, 164, bqad064 (2023). DOI: 10.1210/endocr/bqad064 B01
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  • J. Fu, Y. Nakata, H. Itoh, S. Panthee, H. Hamamoto, K. Sekimizu & *M. Inoue, “Molecular Editing Enhances Oxidation Resistance of Menaquinone-Targeting Antibiotics Lysocin E and WAP-8294A2“, Chem. Eur. J., 29, e202301224 (2023). DOI: 10.1002/chem.202301224 C01
  • H. Inagaki, K. Hayashi, Y. Takaoka, H. Ito, Y. Fukumoto, A. Yajima, X. Chen, M. Shimosato, E. Hasett, K. Hatakeyama, Y. Hirakuri, M. Ishitsuka, E. Yumoto, T. Sakazawa, M. Asahina, K. Uchida, K. Okada, H. Yamane, M. Ueda & *K. Miyamoto,” Genome Editing Approach Revealed a Crucial Role of OsCOI2 in Jasmonate Signaling and Functional1 Diversity of COI1 Homologs in Rice”, Plant Cell Physiol., 64, 405-421 (2023). DOI: 10.1093/pcp/pcac166 A01
  • *M. Ohue, Y. Kojima & T. Kosugi, “Generating potential protein-protein interaction inhibitor molecules based on physicochemical properties”, Molecules, 28, 5652 (2023). DOI: 10.3390/molecules28155652 B01
  • Y. Matsui, T. Kowada, Y. Ding, P.R. Sahoo, K. Kikuchi & *S. Mizukami, “Long-term Imaging of Intranuclear Mg2+ Dynamics during Mitosis using a Localized Fluorescent Probe”, Chem. Commun., 59, 7048-7051 (2023). DOI: 10.1039/d2cc05930d A01
  • Y. Xue, K. Miura, H. Itoh & *M. Inoue, “C-Terminal Modification of Polytheonamide B Uncouples Its Dual Functions in MCF-7 Cancer Cells“, Chem. Commun., 59, 3914-3917 (2023). DOI: 10.1039/D2CC05915K C01
  • B. Chen, Md. M. Hasan, H. Zhang, Q. Zhai, A. S. M. Waliullah, Y. Ping, C. Zhang, S. Oyama, Mst. A. Mimi, Y. Tomochika, Y. Nagashima, T. Nakamura, T. Kahyo, K. Ogawa, D. Kaneda, M. Yoshida & *M. Setou, “UBL3 Interacts with Alpha-Synuclein in Cells and the Interaction Is Downregulated by the EGFR Pathway Inhibitor Osimertinib”, Biomedicines, 11, 1685 (2023). DOI: 10.3390/biomedicines11061685 A01
  • J. Yan, H. Zhang, Y. Tomochika, B. Chen, Y. Ping, S. Islam, S. Aramaki, T. Sato, Y. Nagashima, T. Nakamura, T. Kahyo, D. Kaneda, K. Ogawa, M. Yoshida & *M. Setou, “UBL3 Interaction with α-Synuclein Is Downregulated by Silencing MGST3”, Biomedicines., 11, 2491 (2023). DOI: 10.3390/biomedicines11092491 A01
  • *M. Ueda, N. Kato, Y. Kurata, M. Imai, G. Yang & K. Taniguchi, “Host-selective phytotoxins incorporating the epoxy-triene-decacarboxylate moiety function through the hijacking of the plant-microbe interaction system”, ACS Chem. Biol., 18, 12-17 (2023). DOI: 10.1021/acschembio.2c00777 A01
  • T. Motoyama, T. Nogawa, T. Shimizu, M. Kawatani, T. Kashiwa, C.S. Yun, D. Hashizume & *H. Osada “Fungal NRPS-PKS Hybrid Enzymes Biosynthesize New γ-Lactam Compounds, Taslactams A-D, Analogous to Actinomycete Proteasome Inhibitors“, ACS Chem. Biol., 18, 396-403 (2023). DOI: 10.1021/acschembio.2c00830 B01
  • *K. Miyamoto, N. Yamamoto & Y. Sakakibara, “Quantum algorithm for position weight matrix matching”, IEEE Trans. Quantum Eng., 4, 1-14 (2023). DOI: 10.1109/TQE.2023.3293562 B01
  • Y. Akutsu, T. Fujiwara, R. Suzuki, Y. Nishigaya & *T. Yamazaki, “Juglone, a Plant-Derived 1,4-Naphthoquinone, Binds to Hydroxylamine Oxidoreductase and Inhibits the Electron Transfer to Cytochrome c554” App. Environ. Microbiol., 89, e0129123, (2023). DOI: 10.1128/aem.01291-23 A01
  • *N. Kato, K. Ebihara, T. Nogawa, Y. Futamura, K. Inaba, A. Okano, H. Aono, Y. Fujikawa, H. Inoue, K. Matsuda, H. Osada, R. Niwa & S. Takahashi, “Cis-decalin-containing tetramic acids as inhibitors of insect steroidogenic glutathione s-transferase noppera-bo“, PLoS ONE,18, e0290851 (2023). DOI: 10.1371/journal.pone.0290851 B01
  • M. Ozaki, M. Shimotsuma, T. Kuranaga, *H. Kakeya & *T. Hirose, “Simultaneous separation and identification of all structural isomers and enantiomers of aminobutyric acid using a highly sensitive chiral resolution labeling reagent” Anal. Methods, 15, 6648-6655 (2023). DOI: 10.1039/D3AY01665J A01
  • Y. Awano, H. Tsutsumi, Y. Kikuchi, A. Kimishima, M. Iwatsuki, Y. Asami & *Y. Inahashi “Emblestatin: a new peptide antibiotic from Embleya scabrispora K20-0267”, J. Antibiot., 76, 592-592 (2023). DOI: 10.1038/s41429-023-00645-8 A01
  • C. Okuda, Y. Ueda, M. Muroi, E. Sanada, H. Osada, Y. Shiono, K.I. Kimura, K. Takeda, K. Kawaguchi & *T. Kataoka “Allantopyrone A interferes with the degradation of hypoxia-inducible factor 1α protein by reducing proteasome activity in human fibrosarcoma HT-1080 cells“, J. Antibiot., 76, 324-334 (2023). DOI: 10.1038/s41429-023-00610-5 B01
  • T. Nogawa, N. Kato, T. Shimizu, A. Okano, Y. Futamura, S. Takahashi, H. Koshino & *H. Osada, “Wakodecaline C, new tetrahydrofuran-fused decalin metabolite isolated from fungus Pyrenochaetopsis sp. RK10-F058“, J. Antibiot., 76, 346-350 (2023). DOI: 10.1038/s41429-023-00613-2 B01
  • N. Hatano, *M. Kamada, R. Kojima, *Y. Okuno, “Network-based prediction approach for cancer-specific driver missense mutations using a graph neural network”, BMC bioinformatics, 24, 383 (2023). DOI: 10.1186/s12859-023-05507-6 B01
  • N. Usukhbayar, Y. Takano, S. Uesugi, M. Muroi, H. Osada & *K.I. Kimura, “3,6-Epidioxy-1,10-bisaboladiene induces ferroptosis-like cell death through lipid peroxidation“, Free Radic. Res., 57, 208-222 (2023). DOI:10.1080/10715762.2023.2229005 B01
  • S. Sekine, S. Takase, R. Hayase, K. Noritsugu, Y. Maemoto, Y. Ichikawa, K. Ogawa, Y. Kondoh, H. Osada, M. Yoshida & *A. Ito, “Identification of a derivative of the alkaloid emetine as an inhibitor of the YAP-TEAD interaction and its potential as an anticancer agent”, Biosci. Biotechnol. Biochem., 98, 501-510 (2023). DOI:  10.1093/bbb/zbad022 A01
  • T. Okumura, T. Kitajima, T. Kaji, H. Urano, K. Matsumoto, H. Inagaki, K. Miyamoto, K. Okada & *M. Ueda, “Difference in the ligand affinity among redundant plant hormone receptors of rice OsCOI1a/1b/2-OsJAZs”, Biosci. Biotechnol. Biochem., 87,1122-1128 (2023). DOI: 10.1093/bbb/zbad092 A01
  • S. Sekine, S. Takase, R. Hayase, K. Noritsugu, Y. Maemoto, Y. Ichikawa, K. Ogawa, Y. Kondoh, H. Osada, M. Yoshida & *A. Ito, “Identification of a derivative of the alkaloid emetine as an inhibitor of the YAP-TEAD interaction and its potential as an anticancer agent“, Biosci. Biotechnol. Biochem., 87, 501-510 (2023). DOI: 10.1093/bbb/zbad022 B01
  • S. Yamamoto, I. Sato, M. Fujii, M. Kakimoto, K. Honma, S. Kirihara, H. Nakayama, T. Fukuoka, S. Tamura, M. Ueda, S. Hirohata & *S. Watanabe, “Therapeutic effect of ouabagenin, a novel liver X receptor agonist, on atherosclerosis in nonalcoholic steatohepatitis in SHRSP5/Dmcr rat model”, Can. J. Physiol. Pharmacol.,101, 455-465 (2023). DOI: 10.1139/cjpp-2022-0532 A01
  • J. Zhang, V.V. Betkekar, K, Suzuki & *K. Ohmori, “Diastereoselective Access to anti-b-Hydroxy Sulfoxides from Chiral Epoxides and Prochiral Sulfenate Anions: Mechanistic Insights, Scope and Limitation”, Synlett, 34, A-G (2023). DOI: 10.1055/a-2196-5592 C01
  • R. Yagita, K. Irie & *C. Tsukano, “Toward the Total Synthesis of Schinortriterpenoids: Construction of the all-cis-substituted cyclopropane unit”, Synlett, 34, eFirst (2023). DOI: 10.1055/a-2102-8014 C01
  • M. Ozaki, M. Shimotsuma, T. Kuranaga, *H. Kakeya & *T. Hirose, ”Separation and identification of isoleucine enantiomers and diastereomers using an original chiral resolution labeling reagent”, Chem. Pharm. Bull., 11, 824-831 (2023). DOI: 10.1248/cpb.c23-00439 A01
  • *M. Ohue, “MEGADOCK-on-Colab: an easy-to-use protein-protein docking tool on Google Colaboratory”, BMC Res. Notes, 16, 229 (2023). DOI: 10.1186/s13104-023-06505-w B01
  • X. Liu, E. Sanada, J. Li, X. Li, *H. Osada & *N. Watanabe, “Isolation and characterization of β-transducin repeat-containing protein ligands screened using a high-throughput screening system“, Oncol. Res., 31, 645-654 (2023). DOI:10.32604%2For.2023.030240 B01
  • Z. Liu, A. Okano, E. Sanada, Y. Futamura, T. Nogawa, K. Ishikawa, K. Semba, J. Li, X. Li, *H. Osada & *N. Watanabe, “Identification of microbial metabolites that accelerate the ubiquitin-dependent degradation of c-Myc“, Oncol. Res., 31, 655-666 (2023). DOI: 10.32604%2For.2023.030248 B01
  • *M. Kawatani, H. Aono, S. Hiranuma, T. Shimizu, M. Muroi, T. Nogawa, T. Ohishi, S.I. Ohba, M. Kawada, K. Yamazaki, S. Dan, N. Dohmae & *H. Osada, “Identification of a dihydroorotate dehydrogenase inhibitor that inhibits cancer cell growth by proteomic profiling“, Oncol. Res.,31, 833-844 (2023). DOI: 10.32604/or.2023.030241 B01
  • M. Sasaki, *S. Nishimura, A. Matsuyama & *M. Yoshida, ”Protocol for detecting threonine deaminase activity in fission yeast cell lysates”, STAR Protoc., 4, 102675 (2023). DOI: 10.1016/j.xpro.2023.102675 A01
  • K. Inoue, *R. Kojima, M. Kamada & *Y. Okuno, “An end-to-end framework for gene expression classification by integrating a background knowledge graph: application to cancer prognosis prediction”, arXiv (2023). DOI:10.48550/arXiv.2306.17202 B01
  • K. Furui & M. Ohue, “Faster Lead Optimization Mapper Algorithm for Large-Scale Relative Free Energy Perturbation”, Proceedings of The 29th International Conference on Parallel & Distributed Processing Techniques and Applications (PDPTA’23), in press (2023). https://arxiv.org/pdf/2304.04713.pdf B01
  • T. Ueki & M. Ohue, “Antibody Complementarity-Determining Region Sequence Design using AlphaFold2 and Binding Affinity Prediction Model”, Proceedings of The 29th International Conference on Parallel & Distributed Processing Techniques and Applications (PDPTA’23), in press (2023). Antibody Complementarity-Determining Region Sequence Design using AlphaFold2 and Binding Affinity Prediction Model - Abstract - Europe PMC B01
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  • K. Murakumo, N. Yoshikawa, K. Rikimaru, S. Nakamura, K. Furui, T. Suzuki, H. Yamasaki, Y. Nishigaya, Y. Takagi & M. Ohue, “LLM Drug Discovery Challenge: A Contest as a Feasibility Study on the Utilization of Large Language Models in Medicinal Chemistry”, Proceedings of AI for Accelerated Materials Design (AI4Mat) NeurIPS 2023 Workshop (2023). B01
  • B. Bian, T. Kumagai & *Y. Saito, “VeloPro: A pipeline integrating Ribo-seq and AlphaFold deciphers association patterns between translation velocity and protein structure features among prokaryotic and eukaryotic organisms” iMeta, 2, 4, e148 (2023). DOI: 10.1002/imt2.148 B01

特許

2024年

  • 「タンパク質相互作用を検出する方法」、出願人：大阪大学、発明者：蓑島維文、Jiatong Li、菊地和也、特願2024-31686：2024年3月1日 A01
  • 「抗がん剤」、出願人：京都大学、発明者：掛谷秀昭、池田拓慧、柴崎守弘、特願2024-017369：2024年2月7日 A01
  • 「ホウ素中性子捕獲治療用アルブミンナノプラットフォーム及びそれを含むホウ素中性子捕獲治療用組成物（붕소중성자포획치료용 알부민 나노플랫폼 및 이를 포함하는 붕소중성자포획치료용 조성물）」、出願人：Seoul National University、発明者：Yun-Sang Lee、Ji Yong Park、Takamitsu Hosoya、Takashi Niwa、1020240014785（大韓民国）：2024年1月31日出願 C01

2023年

  • 「ペプチド系抗がん活性化合物」、出願人：東京大学、発明者：井上将行、伊藤寛晃、PCT/JP2023/42956：2023年11月30日 C01
  • 「イソインドリン誘導体」、出願人：理化学研究所、京都大学、発明者：古谷裕、須藤正幸、松浦知和、掛谷秀昭、ルトガー・フォルマー、マルティン・エールランド、特願2023-184174：2023年10月26日 A01
  • 「コロナウイルス感染症を処置することに用いられる抗体」、出願人：理化学研究所、東京大学、滋賀医科大学、発明者：齊藤隆、原田通成、白水美香子、松本武久、出井晶子、井上純一郎、山本瑞生、合田仁、川口寧、伊藤靖、石垣宏仁、仲山美沙子、北川善紀、出願番号：PCT/JP2023/014855、出願日：2023年4月12日、公開番号：WO/2023/199943、公開日：2023年10月19日 A01
  • 「新規アミド化反応」、出願人：京都大学、発明者：掛谷秀昭、倉永健史、小山愛、特願2023-147238：2023年9月11日 A01
  • 「Compounds as antifungal agents, derivatives thereof and novel compounds」、出願人：The University of Tokyo、発明者：Y. Ohya K. Nakama, W. Liu, H. Sekiguchi, Y. Yashiroda, C. Boone, D. Yamanaka、63/578668：2023年8月25日 A01
  • 「新規ピラゾール誘導体及びその用途」、出願人：国立研究開発法人理化学研究所、公益財団法人がん研究会、発明者：風見純一、清宮啓之、吉田稔、八代田陽子、特願2022-125550：2022年8月5日、PCT/JP2023/28365：2023年8月3日 A01
  • 「光反応性金ナノクラスター及び中間体」、出願人：理化学研究所、発明者：渡邊賢司、丹羽 節、細谷孝充、特願2023-109316：2023年7月3日 C01
  • 「フラノクマリン誘導体およびその用途」、出願人：静岡県公立大学法人、国立研究開発法人理化学研究所、国立感染症研究所、発明者： 渡辺賢二、長田裕之、渡邊正悟、川谷誠、中嶋章悟、日紫喜隆行、渡士幸一、特願2023-013326：2023年1月31日 B01

書籍、解説記事等

2024年

  • 村岡勇樹、上田 実、化学掲示板「長年の謎・植物の温度センサー分子を発見！」、月刊化学（化学同人）(2024) A01
  • 丹羽 節、喜井 勲、細谷孝充、「clickable光親和性標識プローブを用いた標的分子同定」実験医学増刊：あなたのラボから薬を生み出す アカデミア創薬の実践 All JAPAN体制の先端技術支援を利用した創薬の最前線化学、善光龍哉、辻川和丈（編）、羊土社、205-211 (2024) 、 2024年2月1日発行 C01
  • 丹羽 節、田原 強、Charles E. Chase、Francis G. Fang、中岡貴義、入江さつき、林中恵美、和田康弘、向井英史、増富健吉、渡辺恭良、崔翼龍、細谷孝充、「脳膠芽腫のコンパニオン診断用PETトレーサーとしての[11C]エリブリンの合成」、JSMI Report、17、30-33 (2024) C01

2023年

  • 小西祐輝、蓑島維文、菊地和也、「MRIの現在と未来-マルチカラー19F MRIがもたらすもの」、化学12月号、12、 62-63 (2023) A01
  • 蓑島維文、菊地和也、「生命機能を可視化するさまざまな化学蛍光プローブ」、医学のあゆみ7月生体イメージングの最前線、白石泰夫（編）、医歯薬出版株式会社、337-342 (2023) A01
  • 掛谷秀昭、「創薬リード探索へのケモインフォマティクスの応用　ケモインフォマティクスにおけるデータ収集の最適化と解析方法～組成予測や化学構造の生成・合成経路探索や反応条件最適化・毒性評価～」、技術情報協会、519-526 (2023) A01
  • 掛谷秀昭、新講座・天然物化学① 「天然有機化合物と”くすり”」、日本化学会「化学と教育」、71、 492-495 (2023) A01
  • 奥村太知、上田 実、香りの化学「ジャスモン酸と植物の香りのケミカルバイオロジー」、化学と教育、73、98-101 (2023) A01
  • 長田裕之、「新薬創製談話会とブロススクリーニングネットワーク備忘録」、Actinomycetologica、 37、 94-101 (2023) B01
  • 長田裕之、「天は自ら助くる者を助く」、有機合成化学協会誌、81、 1194-1197 (2023) B01
  • 野川俊彦、植木雅志、長田裕之、「微生物に新規物質を求めて」、未培養微生物研究の最新動向、青柳秀紀監修、シーエムシー出版、157-165 (2023) B01
  • 山口 秀輝、齋藤 裕、「タンパク質の言語モデル」 JSBi Bioinformatics Review、 4、 52-67 (2023) DOI: 10.11234/jsbibr.2023.1. B01
  • 大上雅史、「AlphaFoldによる高精度なタンパク質立体構造予測と創薬への応用」、PHARM STAGE、 23、 24-28 (2023) B01
  • 大上雅史、「AlphaFoldによるタンパク質立体構造予測（実践編）」、生物工学会誌 2023年8月号、 101、 443-446 (2023). DOI: 10.34565/seibutsukogaku.101.8_443 B01
  • 大上雅史、「PPI（タンパク質間相互作用）を標的とするドラッグデザイン」、タンパク質の構造解析手法とIn silicoスクリーニングへの応用事例、技術情報協会、402-410 (2023) B01
  • 大上雅史、「AIによって変わる生命科学」、現代化学 2023年8月号、東京化学同人、28-30 (2023) B01
  • 大森　建、「未踏の化合物空間：高次構造フラボノイドの合成研究」現代化学増刊47：有機化学イノベーション、山本尚（監修）、東京化学同人、155-169 (2023) C01
  • 大森 建、「カルタミン合成における試行錯誤」ドラマティック有機合成化学：感動の瞬間100、有機合成化学協会（編）、化学同人、69-69 (2023) C01
  • 大森 建、「最新のトピックス　キラリティーをリサイクルする−逆転の発想：キラルスルホキシドの光ラセミ化」、月刊化学、vol.78（11月号）、66-67 (2023) C01
  • 塚野千尋、「歪んだ3員環を含む生物活性天然物の全合成」、化学と生物、 61、 288–295 (2023) C01
  • H. Itoh, “Discovery of Natural Product Analogues with Altered Activities by a High-Throughput Strategy,” New Tide of Natural Product Chemistry, H. Ishikawa and H. Takayama, eds., Springer, Singapore, 333-354 (2023)
    DOI: 10.1007/978-981-99-1714-3_16 C01